Vaccines & Infectious Diseases

“To combat infectious diseases, such as COVID-19 and influenza, we are comprehensively evaluating the safety and effectiveness of vaccines in current use, conducting clinical trials of promising new vaccines, and studying the patterns of how these illnesses spread.”

Lisa A. Jackson, MD, MPH
Kaiser Permanente Washington Health Research Institute Senior Investigator

Research overview

Vaccines save lives by protecting people against infectious diseases — polio, influenza, and pneumonia to name a few. Kaiser Permanente Washington Health Research Institute (KPWHRI) is working to protect communities through research to continually improve the safety and effectiveness of vaccines for infectious diseases of public health importance.

Central to this work is testing new vaccines against emerging diseases — such as COVID-19. In March 2020, KPWHRI gave the world’s first-ever injection of an investigational vaccine for COVID-19 in a phase 1 clinical trial led by Senior Investigator Lisa A. Jackson, MD, MPH. We continue to be at the forefront of efforts to understand and combat COVID-19. To learn more, see COVID-19 research at KPWHRI.

Successes over 3 decades of KPWHRI vaccine research include:

  • A large study of flu vaccination in seniors that found that the vaccine might not protect them from pneumonia as well as hoped
  • A “real-time” evaluation of the safety of the shingles vaccine in older adults across the Vaccine Safety Datalink network
  • Clinical trials of investigational flu vaccines, including ones against pandemic flu and bird flu, in adults
  • Studies to better understand and address vaccine hesitancy among families who delay or refuse to vaccinate their children because of safety fears, leading to outbreaks of potentially deadly illnesses such as whooping cough and measles
  • The biggest retrospective study of pneumococcal polysaccharide vaccine effectiveness in adults, and the largest clinical trial on the safety of this vaccine
  • The pivotal clinical trials of 7-valent, 13-valent, and 20-valent pneumococcal conjugate vaccines in older adults 

Our current research projects on vaccines and infectious diseases include:

  • Clinical trials conducted by the Vaccine and Treatment Evaluation Unit, funded by the National Institute of Allergy and Infectious Diseases, and part of the Infectious Disease Clinical Research Consortium (IDCRC). Led by Dr. Lisa Jackson, the unit launched the world’s first trial of an experimental COVID-19 vaccine — the now-approved NIH-Moderna vaccine — and continues to test the safety and effectiveness of COVID-19 vaccines and boosters. To learn more, see COVID-19 research at KPWHRI.
  • Studies of how infectious diseases such as COVID-19 and influenza spread through communities
  • Research to explore what types of communication and community engagement strategies are most effective at improving COVID-19 vaccine uptake among workers in long-term care facilities. Clarissa Hsu, PhD, is leading this research, which is being funded by a $4.75 million award from the Patient-Centered Outcomes Research Institute (PCORI).
  • Ongoing monitoring of the effectiveness of the influenza and COVID-19 vaccines by the U.S. Influenza Vaccine Effectiveness Network, led by Karen J. Wernli, PhD, KPWHRI senior investigator, and funded by the CDC (Centers for Disease Control and Prevention)
  • Studies of immunization safety through the Vaccine Safety Datalink project, supported by the CDC and connecting information in large databases maintained by 8 American health plans including Kaiser Permanente Washington
  • Methodological research, led by Jennifer C Nelson, PhD, and Andrea J. Cook, PhD, to improve the statistical design and analysis approaches used to address vaccine safety questions in electronic health record data settings

Recent publications on Vaccines & Infectious Disease

Heng F, Magaret CA, Rouphael NG, Branche AR, Fong Y, Carpp LN, Yu C, Chen S, Zhang B, Diemert DJ, Falsey AR, Graciaa DS, Baden LR, Frey SE, Whitaker JA, Little SJ, Kamidani S, Walter EB, Novak RM, Rupp R, Jackson LA, Babu TM, Kottkamp AC, Luetkemeyer AF, Immergluck LC, Presti RM, Bäcker M, Winokur PL, Mahgoub SM, Goepfert PA, Fusco DN, Atmar RL, Posavad CM, Mu J, Makowski M, Makhene MK, Nayak SU, Simon V, van Bakel H, Roberts PC, Gilbert PB The neutralizing antibody titer correlate of COVID-19 risk in the COVID-19 variant immunologic landscape (COVAIL) trial was not modified by SARS-CoV-2 amino acid sequence distances 2026 Mar 19;76:128348 doi:10.1016/j.vaccine.2026.128348. doi: 10.1016/j.vaccine.2026.128348. Epub 2026-02-15. PubMed

Irving SA, Crane B, Daley MF, Dixon BE, Donahue JG, Fuller CC, Jackson LA, Getahun D, Glenn SC, Hambidge SJ, Jacobson KB, Kharbanda EO, O'Leary ST, Schmidt T, Raisler K, Weinfield NS, Williams JTB, Zerbo O, Naleway AL 2023-2024 COVID-19 vaccination coverage in pregnancy in ten healthcare delivery organizations in the United States 2026 Mar 12;79:128441. doi: 10.1016/j.vaccine.2026.128441. Epub 2026-03-12. PubMed

Maloney P, Reeves EL, Wielgosz K, Price AM, Natarajan K, DeSilva MB, Dascomb K, Klein NP, Tartof SY, Irving SA, Grannis SJ, Ong TC, Weber ZA, Schuster JE, Zerr DM, Michaels MG, Boom JA, Halasa NB, Staat MA, Weinberg GA, House SL, Saade EA, Geffel KM, Gaglani M, Wernli KJ, Murugan V, Martin ET, Bontrager NAB, Kirby MK, Payne AB, Dawood FS, Tannis A, Moline HL, Zhao SK, Adams K, DeCuir J, Olson SM, Chung JR, Lewis N, Flannery B, Reed C, Garg S, Ellington S, CDC Influenza Vaccine Effectiveness Collaborators, CDC Influenza Vaccine Effectiveness Collaborators Interim Estimates of 2025-26 Seasonal Influenza Vaccine Effectiveness - United States, September 2025-February 2026 2026 Mar 12;75(9):116-123. doi: 10.15585/mmwr.mm7509a2. Epub 2026-03-12. PubMed

Biddle JE, House S, Kwon JH, Presti RM, Fritz SA, Curley T, McLaren SH, Stockwell MS, Schmitz J, Talbot HK, Grijalva CG, Saade EA, Albar Z, Murugan V, Cruz RA, Martin ET, Vaughn IA, Wernli KJ, Wickersham BM, Zimmerman RK, Geffel KM, Gaglani M, Smith ME, Walter EB, Bontrager NAB, Bristol L, Price AM, Chung JR, Flannery B, Rolfes MA, Mellis AM Estimating influenza transmission parameters: Comparing two study designs, 2023-2024 2026 Mar;54:100888 doi:10.1016/j.epidem.2026.100888. doi: 10.1016/j.epidem.2026.100888. Epub 2026-01-12. PubMed

Lima NS, McCormick L, Li S, Wake CG, Subramanian R, Spangler A, Pinto Y, Catalano W, Henry AR, Laboune F, Teng IT, Lyke KE, Atmar RL, Deming ME, Jackson LA, Branche AR, Rostad CA, Martin JM, Johnston CM, Rupp RE, Kottkamp AC, Brady RC, Backer M, Edupuganti S, , Posavad CM, Roberts PC, Kwong PD, Andrews S, Schramm CA, Douek DC The vaccine platform used for COVID-19 primary immunization shapes the quality of the human B cell response to a vaccine boost 2026 Feb 25;18(838):eaeb9837 doi:10.1126/scitranslmed.aeb9837. doi: 10.1126/scitranslmed.aeb9837. Epub 2026-02-25. PubMed

Researchers in Vaccines & Infectious Disease

Andrea J. Cook, PhD

Senior Biostatistics Investigator
206-287-4257
Andrea.J.Cook@kp.org

Curriculum vitae (CV)

Sascha Dublin, MD, PhD

Senior Investigator
206-287-2870
Sascha.Dublin@kp.org

Curriculum vitae (CV)

Clarissa Hsu, PhD

Associate Investigator
206-287-4276
Clarissa.W.Hsu@kp.org

Curriculum vitae (CV)

Noorie Hyun, PhD

Associate Biostatistics Investigator
Noorie.Hyun@kp.org

Curriculum vitae (CV)

Lisa A. Jackson, MD, MPH

Senior Investigator
Lisa.A.Jackson@kp.org

Curriculum vitae (CV)

Jennifer C. Nelson, PhD

Director, Biostatistics; Senior Investigator
206-287-2004
Jen.Nelson@kp.org

Curriculum vitae (CV)

Pamela A. Shaw, PhD, MS

Senior Biostatistics Investigator
Pamela.A.Shaw@kp.org

Curriculum vitae (CV)

Robert D. Wellman, MS

Principal Collaborative Biostatistician
206-287-2557
Robert.D.Wellman@kp.org

Curriculum vitae (CV)

Brian D. Williamson, PhD

Associate Biostatistics Investigator
206-287-2024
Brian.D.Williamson@kp.org

Curriculum vitae (CV)

Onchee Yu, MS

Principal Collaborative Biostatistician
206-287-2389
Onchee.Yu@kp.org

Curriculum vitae (CV)

 

Affiliate researchers

Doug Opel, MD, MPH
University of Washington (UW) Department of Bioethics and Humanities; UW Department of Pediatrics; UW Medical Center

Adjunct researchers

John Dunn, MD, MPH
Kaiser Foundation Health Plan of Washington

Elizabeth Lin, MD, MPH
Kaiser Foundation Health Plan of Washington Family Practice;
Kaiser Permanente Washington Health Research Institute